plot,GRanges,ANY-method

GRanges

GRanges-method

plot,RangedData,ANY-method

RangedData

RangedData-method

further arguments, see plotRanges()

See plotRanges()
Plot method for RangedData objects

Utilises GRanges, data.frame or IRanges objects. Integrates gene annotation for ImmunoChip (or your custom chip) with function calls. Intuitive wrappers for annotation lookup (gene lists, exon ranges, etc) and conversion (e.g, between build 36 and 37 coordinates). Conversion between ensembl and HGNC gene ids, chip ids to rs-ids for SNP-arrays. Retrieval of chromosome and position for gene, band or SNP-ids, or reverse lookup. Simulation functions for ranges objects.

Nicholas Cooper

humarray

Simplify Analysis and Annotation of Human Microarray Datasets

plot,GRanges,ANY-method function

Plot method for GRanges objects — plot,GRanges,ANY-method

Plot method for GRanges objects

plot,GRanges,ANY-method: Plot method for GRanges objects

Description

Usage

Arguments

See Also