hwexact

snphwe

Observed number of individuals homozygous for the common allele.

obs.hom1

Observed number of heterozygous individuals.

obs.hets

Observed number of individuals homozygous for the rare allele.

obs.hom2

If not <code>NULL</code>, specifies a data frame holding the data.

data

If <code>data</code> is not <code>NULL</code>, column that holds some
   combination of symbols of the form <code>AA</code>, <code>Aa</code> and <code>aa</code>.

loci

Column that holds the frequencies, if <code>data</code> is not
   <code>NULL</code>.

observed

This function implements an exact SNP test of
  Hardy-Weinberg equilibrium. It is a wrapper for <code>snphwe</code>

htest

univar

Fits models for genotypic disequilibria, as described in
        Huttley and Wilson (2000), Weir (1996) and Weir and Wilson
        (1986).  Contrast terms are available that account for first
        order interactions between loci.  Also implements, for a single
        locus in a single population, a conditional exact test for
        Hardy-Weinberg equilibrium

hwexact: Exact test of HWE

Description

Usage

Arguments

Value

References

Examples