hwexact

snphwe

Observed number of individuals homozygous for the common allele.

obs.hom1

Observed number of heterozygous individuals.

obs.hets

Observed number of individuals homozygous for the rare allele.

obs.hom2

If not <code>NULL</code>, specifies a data frame holding the data.

data

If <code>data</code> is not <code>NULL</code>, column that holds some
   combination of symbols of the form <code>AA</code>, <code>Aa</code> and <code>aa</code>.

loci

Column that holds the frequencies, if <code>data</code> is not
   <code>NULL</code>.

observed

This function implements an exact SNP test of
  Hardy-Weinberg equilibrium. It is a wrapper for <code>snphwe</code>

htest

univar

Fits models for genotypic disequilibria, as described in
  Huttley and Wilson (2000), Weir (1996) and Weir and Wilson (1986).
  Contrast terms are available that account for first order interactions
  between loci.  Also implements, for a single locus in a single 
  population, a conditional exact test for Hardy-Weinberg equilibrium.

hwexact: Exact test of HWE

Description

Usage

Arguments

Value

References

Examples