decode.genotypes

Vectors ma, maa and oset (offset) are returned.

models

Fits models for genotypic disequilibria, as described in
Huttley and Wilson (2000) <doi:10.1093/genetics/156.4.2127>, Weir (1996) and Weir and Wilson (1986).
Contrast terms are available that account for first order interactions
between loci. Also implements, for a single locus in a single
population, a conditional exact test for Hardy-Weinberg equilibrium.

John Maindonald

hwde

Models and Tests for Departure from Hardy-Weinberg Equilibrium
and Independence Between Loci

decode.genotypes function

<dl> <dt>genotype</dt>
<dd>The vector <code>genotype</code> holds two-letter codes
 for the three genotypes. For example, the values may be AA, Aa and aa.</dd></dl>

Arguments

Author

Creates contrasts that relate to a single locus — decode.genotypes

<dl>

 <dt>genotype</dt>
<dd>The vector <code>genotype</code> holds two-letter codes
 for the three genotypes. For example, the values may be AA, Aa and aa.</dd>

</dl>

decode.genotypes: Creates contrasts that relate to a single locus

Description

Usage

Value

Arguments

Author

See Also

Examples