hwenodr

We run a likelihood ratio test against the null of no HWE, assuming that
there is no double reduction.

Inference concerning equilibrium and random mating in
autopolyploids. Methods are available to test for equilibrium
and random mating at any even ploidy level (>2) in the presence
of double reduction at biallelic loci. For autopolyploid populations
in equilibrium, methods are available to estimate the degree of
double reduction. We also provide functions to calculate genotype
frequencies at equilibrium, or after one or several rounds of
random mating, given rates of double reduction. The main function is
hwefit(). This material is based upon work supported by the
National Science Foundation under Grant No. 2132247. The opinions,
findings, and conclusions or recommendations expressed are those of
the author and do not necessarily reflect the views of the National
Science Foundation. For details of these methods, see
Gerard (2023a) <doi:10.1111/biom.13722> and
Gerard (2023b) <doi:10.1111/1755-0998.13856>.

David Gerard

hwep

Hardy-Weinberg Equilibrium in Polyploids

NSF DBI 2132247 

hwenodr function

<dl><dt>nvec</dt>
<dd>A vector containing the observed genotype counts,
where <code>nvec[[i]]</code> is the number of individuals with genotype
<code>i-1</code>. This should be of length <code>ploidy+1</code>.</dd></dl>

Arguments

Author

Test for HWE in autopolyploids under the assumption of no double reduction — hwenodr

<dl>

<dt>nvec</dt>
<dd>A vector containing the observed genotype counts,
where <code>nvec[[i]]</code> is the number of individuals with genotype
<code>i-1</code>. This should be of length <code>ploidy+1</code>.</dd>

</dl>

hwenodr: Test for HWE in autopolyploids under the assumption of no double reduction

Description

Usage

Value

Arguments

Author

Examples