F_beta

Compute a F_beta score comparing two boolean vectors

Given a high-dimensional dataset that typically represents a cytometry dataset, and a subset of the datapoints, this algorithm outputs an hyperrectangle so that datapoints within the hyperrectangle best correspond to the specified subset. In essence, this allows the conversion of clustering algorithms' outputs to gating strategies outputs.

Etienne Becht

hypergate

Machine Learning of Hyperrectangular Gating Strategies for
High-Dimensional Cytometry

Samuel Granjeaud

F_beta function

<dl><dt>pred</dt>
<dd>boolean vector of predicted values</dd>
<dt>truth</dt>
<dd>boolean vector of true values</dd>
<dt>beta</dt>
<dd>Weighting of yield as compared to precision. Increase beta so that the optimization favors yield, or decrease to favor purity.</dd></dl>

Arguments

F_beta — F_beta

<dl>

<dt>pred</dt>
<dd>boolean vector of predicted values</dd>


<dt>truth</dt>
<dd>boolean vector of true values</dd>


<dt>beta</dt>
<dd>Weighting of yield as compared to precision. Increase beta so that the optimization favors yield, or decrease to favor purity.</dd>

</dl>

F_beta: F_beta

Description

Usage

Arguments

Examples