boolmat

Convert an expression matrix and a gating strategy to a boolean matrix (whether each event is gated out by each channel)

Given a high-dimensional dataset that typically represents a cytometry dataset, and a subset of the datapoints, this algorithm outputs an hyperrectangle so that datapoints within the hyperrectangle best correspond to the specified subset. In essence, this allows the conversion of clustering algorithms' outputs to gating strategies outputs.

Etienne Becht

hypergate

Machine Learning of Hyperrectangular Gating Strategies for
High-Dimensional Cytometry

Samuel Granjeaud

boolmat function

<dl><dt>gate</dt>
<dd>A return from hypergate</dd>
<dt>xp</dt>
<dd>Expression matrix as in the hypergate callxp=Samusik_01_subset$xp_src[,Samusik_01_subset$regular_channels]</dd></dl>

Arguments

boolmat — boolmat

<dl>

<dt>gate</dt>
<dd>A return from hypergate</dd>


<dt>xp</dt>
<dd>Expression matrix as in the hypergate callxp=Samusik_01_subset$xp_src[,Samusik_01_subset$regular_channels]</dd>

</dl>

boolmat: boolmat

Description

Usage

Arguments

Examples