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Extract information about a hypergate return: the channels of the phenotype, the sign of the channels, the sign of the comparison, the thresholds. The function could also compute the Fscores if the xp, gate_vector and level parameters are given.
hgate_info(hgate, xp, gate_vector, level, beta = 1)A data.frame with channel, sign, comp and threshold columns, and optionnally deltaF (score deterioration when parameter is ignored),Fscore1d (F_value when using only this parameter) and Fscore (F score when all parameters up to this one are included). Fscores are computed if xp, gate_vector and level are passed to the function.
A hypergate object (produced by hypergate())
The expression matrix from which the 'hgate' parameter originates, needed for Fscore computation
Categorical data from which the 'hgate' parameter originates, needed for Fscore computation
Level of gate_vector identifying the population of interest, needed for Fscore computation
Beta to weight purity (low beta) or yield (high beta) more, needed for Fscore computation
hg_pheno, hg_rule
data(Samusik_01_subset)
xp=Samusik_01_subset$xp_src[,Samusik_01_subset$regular_channels]
gate_vector=Samusik_01_subset$labels
hg=hypergate(xp=xp,gate_vector=gate_vector,level=23,delta_add=0.01)
hgate_info(hgate=hg)
hgate_pheno(hgate=hg)
hgate_rule(hgate=hg)
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