hgate_pheno

Build a human readable phenotype, i.e. a combination of channels
 and sign (+ or -) from a hypergate return.

Given a high-dimensional dataset that typically represents a cytometry dataset, and a subset of the datapoints, this algorithm outputs an hyperrectangle so that datapoints within the hyperrectangle best correspond to the specified subset. In essence, this allows the conversion of clustering algorithms' outputs to gating strategies outputs.

Etienne Becht

hypergate

Machine Learning of Hyperrectangular Gating Strategies for
High-Dimensional Cytometry

Samuel Granjeaud

hgate_pheno function

<dl><dt>hgate</dt>
<dd>A hypergate object (produced by hypergate())</dd>
<dt>collapse</dt>
<dd>A character string to separate the markers.</dd></dl>

Arguments

hgate_pheno — hgate_pheno

<dl>

<dt>hgate</dt>
<dd>A hypergate object (produced by hypergate())</dd>


<dt>collapse</dt>
<dd>A character string to separate the markers.</dd>

</dl>

hgate_pheno: hgate_pheno

Description

Usage

Value

Arguments

See Also

Examples