hzar (version 0.2-5)

hzar.doFit: Run the optimizer.

Description

Run the optimizer using the parameters listed in the hzar.fitRequest given.

Usage

hzar.doFit(fitRequest)

Arguments

fitRequest

The hzar.fitRequest object to be processed

Value

An updated hzar.fitRequest object.

See Also

hzar.fitRequest MCMCmetrop1R

Examples

data(manakinMolecular);
mknAdaA <-
  hzar.doMolecularData1DPops(manakinMolecular$distance,
                             manakinMolecular$ada.A,
                             manakinMolecular$ada.nSamples);
mknAdaAmodel <-
  hzar.makeCline1DFreq(mknAdaA, scaling="fixed",tails="none");
mknAdaAmodel <-
  hzar.model.addBoxReq(mknAdaAmodel, -30, 600)
mknAdaAmodelFit <-
   hzar.first.fitRequest.old.ML(model=mknAdaAmodel,
                                mknAdaA,
                                verbose=FALSE);
mknAdaAmodelFit$mcmcParam$chainLength <- 5e3;
mknAdaAmodelFit$mcmcParam$burnin <- 1e2;
str(hzar.doFit(mknAdaAmodelFit));