hzar (version 0.2-5)

hzar.first.fitRequest.old.ML: Generate a ML based hzar.fitRequest using a meta model structure.

Description

This method generates a hzar.fitRequest object suitable for hzar.doFit.

Usage

hzar.first.fitRequest.old.ML(model, obsData, verbose = TRUE)
hzar.first.fitRequest.gC(gModel, obsData, verbose = TRUE)

Arguments

model

A clineMetaModel object.

gModel

A clineMetaModel object generated by hzar.makeCline1DNormal.

obsData

The hzar.obsData object to which the meta model is to be fit.

verbose

Should MCMCmetrop1R be verbose?

Value

A hzar.fitRequest object.

See Also

hzar.fitRequest hzar.obsData clineMetaModel

Examples

data(manakinMolecular);
mknAdaA <-
  hzar.doMolecularData1DPops(manakinMolecular$distance,
                             manakinMolecular$ada.A,
                             manakinMolecular$ada.nSamples);
mknAdaAmodel <-
  hzar.makeCline1DFreq(mknAdaA, scaling="fixed",tails="none");
mknAdaAmodelFit <-
   hzar.first.fitRequest.old.ML(model=mknAdaAmodel ,
                                mknAdaA,
                                verbose=FALSE);
mknAdaAmodelFit$mcmcParam$chainLength <- 1e5;
str(mknAdaAmodelFit);