hzar (version 0.2-5)

hzar.make.clineLLfunc.old.ML: Generate a Log Likelihood method for the cline model.

Description

A low-level method for assembling a cline likelihood method. See hzar.first.fitRequest.old.ML for an easier to use method for working with clines. Using the arguments given, assemble either a maximum likelihood (ML) or bayesian (bayes) function with a single argument theta. The result is suitable for MCMCmetrop1R.

Usage

hzar.make.clineLLfunc.old.ML(param.free.names, param.fixed, param.check.func, meta.cline.func, model.LL, LLrejectedModel = -1e+08) 
hzar.make.clineLLfunc.old.bayes(param.free.names, param.fixed, param.check.func, meta.cline.func, model.LL, prior.LL, LLrejectedModel = -1e+08)

Arguments

param.free.names

The names of the free parameters.

param.fixed

A named list of the fixed parameters.

param.check.func

A boolean function of the parameters, which returns true if the model described is valid.

meta.cline.func

A function of the parameters, which returns a function of distance estimating frequency.

model.LL

A function which takes one argument and returns a log likelihood. The argument is a function of distance estimating frequency.

LLrejectedModel

A finite log likelihood of an invalid model.

prior.LL

A function of the parameters, which returns the log likelihood of those parameters.

Value

A function with a single argument theta that returns a finite log likelihood.Theta is a named list of the free parameters for a cline.

See Also

MCMCmetrop1R hzar.first.fitRequest.old.ML

Examples

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