hzar (version 0.2-5)

hzar.plot.cline: Generate a plot of the cline.

Description

Plots a line representing the expected frequency versus distance for the given object. For hzar.dataGroup and hzar.obsDataGroup objects, plots the observed data backing the model. For hzar.obsDataGroup objects, plots the maximum likelihood cline for each model.

Usage

hzar.plot.cline(cline, add = FALSE, ylim=FALSE, ...)

Arguments

cline

A hzar.cline, hzar.dataGroup or hzar.obsDataGroup object.

add

Add to an existing plot if TRUE.

ylim

Grapical parameter passed to plot. If FALSE, determine ylim from cline if needed.

...

Arguments to be passed to methods, such as graphical parameters (see plot).

See Also

plot

Examples

data(manakinMolecular);
mknAdaA <-
  hzar.doMolecularData1DPops(manakinMolecular$distance,
                             manakinMolecular$ada.A,
                             manakinMolecular$ada.nSamples);
hzar.plot.obsData(mknAdaA);
mknAdaAmodel <-
  hzar.makeCline1DFreq(mknAdaA, scaling="fixed",tails="none");
mknAdaAmodel <-
  hzar.model.addBoxReq(mknAdaAmodel,-30,600);
mknAdaAmodelFitR <-
   hzar.first.fitRequest.old.ML(model=mknAdaAmodel ,
                                mknAdaA,
                                verbose=FALSE);
mknAdaAcline <- hzar.gen.cline(list(center=300,width=10),
                               mknAdaAmodelFitR);
hzar.plot.cline(mknAdaAmodelFitR);
hzar.plot.cline(mknAdaAcline,add=TRUE);