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iBMQ (version 1.12.0)

integrated Bayesian Modeling of eQTL data

Description

integrated Bayesian Modeling of eQTL data

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Version

Version

1.12.0

License

Artistic-2.0

Maintainer

Gregory C Imholte

Last Published

February 15th, 2017

Functions in iBMQ (1.12.0)

snp

A set of 1700 SNP from 68 BXD RIS mice.
eqtlClassifier

Classifying the eQTLs
iBMQ-package

iBMQ : An Integrated Hierarchical Bayesian Model for Multivariate eQTL Mapping
map.liver

SNP position data frame
hotspotFinder

hotspotFinder
eqtlMcmc

Bayesian Multiple eQTL mapping using MCMC
eqtlFinder

eqtlFinder
genepos

Gene position data frame
calculateThreshold

Calculate PPA significance threshold leading to a desired false discovery rate
genotype.liver

A set of 290 SNPs from 60 F2 mice.
probe.liver

Gene position data frame
PPA.liver

A matrix with Posterior Probabilities of Association
gene

Gene expression from whole eye tissue from n = 68 BXD RIS mice.
snppos

SNP position data frame
phenotype.liver

Gene expression from liver tissue from n = 60 F2 mice.