getExpfeatures

Internal function for matching expression features.

Implementation of the classifier described in the paper Ali HR et al (2014) <doi:10.1186/s13059-014-0431-1>. It uses copy number and/or expression form breast cancer data, trains a Tibshirani's 'pamr' classifier with the features available and predicts the iC10 group.

Oscar Rueda

iC10

A Copy Number and Expression-Based Classifier for Breast Tumours

Oscar M Rueda

getExpfeatures function

<dl> <dt>Exp</dt>
<dd>Matrix of expression features</dd> <dt>Probes</dt>
<dd>Vector of probes to match</dd> <dt>Synonyms</dt>
<dd>vector of synonyms fo gene names</dd> <dt>by.feat</dt>
<dd>either "probe" or "gene"</dd></dl>

Arguments

Author

Internal function for matching expression features. — getExpfeatures

<dl>

 <dt>Exp</dt>
<dd>Matrix of expression features</dd>

 <dt>Probes</dt>
<dd>Vector of probes to match</dd>

 <dt>Synonyms</dt>
<dd>vector of synonyms fo gene names</dd>

 <dt>by.feat</dt>
<dd>either "probe" or "gene"</dd>

</dl>

getExpfeatures: Internal function for matching expression features.

Description

Usage

Value

Arguments

Author

References

See Also