IntClustMemb

<p>iC10 assignment for the Metabric training dataset (997 samples).</p>

datasets

Training datasets for iC10; which implements the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. Genomic annotation for the training dataset has been obtained from Mark Dunning's lluminaHumanv3.db package.

Oscar Rueda

iC10TrainingData

Training Datasets for iC10 Package

IntClustMemb function

<p>The format is:
 Factor w/ 10 levels "1","2","3","4",..: 2 9 3 3 8 6 7 7 7 3 ...
 - attr(*, "names")= chr [1:997] "MB.0135" "MB.0167" "MB.0136" "MB.3403" ...</p>

IntClustMemb: Class Membership for the training set

Description

Usage

Arguments

Format

Examples