train.CN

<p>Copy number data for the training set</p>

datasets

Training datasets for iC10; which implements the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. Genomic annotation for the training dataset has been obtained from Mark Dunning's lluminaHumanv3.db package.

Oscar Rueda

iC10TrainingData

Training Datasets for iC10 Package

train.CN function

<p>A matrix with 714 rows and 997 columns. Rows are features and columns are training samples.</p>

train.CN: Copy number data for the training set

Description

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Examples