iCellR (version 1.6.1)

find.dim.genes: Find model genes from PCA data

Description

This function takes an object of class iCellR finds the model genes to run a second round of PCA.

Usage

find.dim.genes(x = NULL, dims = 1:10, top.pos = 15, top.neg = 5)

Arguments

x

An object of class iCellR.

dims

PC dimentions to be used.

top.pos

Number of top positive marker genes to be taken from each PC, default = 15.

top.neg

Number of top negative marker genes to be taken from each PC, default = 5.

Value

An object of class iCellR.

Examples

# NOT RUN {
demo.obj <- find.dim.genes(demo.obj, dims = 1:10,top.pos = 20, top.neg = 20)

head([e-mail])

# }