iCellR (version 1.6.1)

hto.anno: Demultiplexing HTOs

Description

Demultiplexing HTOs

Usage

hto.anno(hto.data = "data.frame", cov.thr = 10, assignment.thr = 80)

Arguments

hto.data

HTO raw data

cov.thr

A number which avrage coverage is devided by to set a thershold for low coverage, default = 10.

assignment.thr

A percent above which you decide to set as a good sample assignment/HTO, default = 80.

Value

An object of class iCellR

Examples

# NOT RUN {
my.hto <- read.table(file = system.file('extdata', 'dense_umis.tsv',
         package = 'iCellR'),
         as.is = TRUE)
head(my.hto)[1:5]

htos <- hto.anno(hto.data = my.hto)
head(htos)

boxplot(htos$percent.match)

# }