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iCluster (version 2.1.0)

Integrative clustering of multiple genomic data types

Description

Integrative clustering of multiple genomic data types using a joint latent variable model.

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Install

install.packages('iCluster')

Monthly Downloads

36

Version

2.1.0

License

GPL (>= 2)

Maintainer

Ronglai Shen

Last Published

May 8th, 2012

Functions in iCluster (2.1.0)

simu.datasets

simulated dataset.
iCluster

Integrative clustering of multiple genomic data types
plotRI

A function to generate reproducibility index plot.
breast.chr17

Breast cancer data set DNA copy number and mRNA expression measure on chromosome 17
tune.iCluster2

Model tuning function
plotHeatmap

A function to generate heatmap panels sorted by integrated cluster assignment.
coord

genomic coordinates
glp

good lattice points using the uniform design
compute.pod

A function to compute the proportion of deviation from perfect block diagonal matrix
iCluster2

A variant of the iCluster method with variance weighted shrinkage
plotiCluster

A function to generate cluster separability matrix plot.
gbm

GBM data