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iGC (version 1.2.2)
An integrated analysis package of Gene expression and Copy number alteration
Description
This package is intended to identify differentially expressed genes driven by Copy Number Alterations from samples with both gene expression and CNA data.
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Version
1.2.2
1.2.0
1.0.0
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Version
1.2.2
License
GPL-2
Issues
0
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0
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1
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Repository
http://github.com/ccwang002/iGC
Maintainer
LiangBo Wang
Last Published
January 1st, 1970
Functions in iGC (1.2.2)
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create_sample_desc
Create sample description table containing all required inputs
create_gene_cna
Load and map CNA gain/loss onto human gene location by genome reference
create_gene_exp
Create an joint gene expression table of all samples
hg19DBNM
hg19-RefSeq
iGC
iGC: an integrated analysis package of gene expression and copy number alteration
direct_gene_cna
Load the existed CNA gain/loss based on gene location.
find_cna_driven_gene
Perform an integrated analysis of gene expression (GE) and copy number alteration (CNA)