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iGC (version 1.2.2)

An integrated analysis package of Gene expression and Copy number alteration

Description

This package is intended to identify differentially expressed genes driven by Copy Number Alterations from samples with both gene expression and CNA data.

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Version

Version

1.2.2

License

GPL-2

Issues

0

Pull Requests

0

Stars

1

Forks

1

Maintainer

LiangBo Wang

Last Published

February 15th, 2017

Functions in iGC (1.2.2)

create_sample_desc

Create sample description table containing all required inputs
create_gene_cna

Load and map CNA gain/loss onto human gene location by genome reference
create_gene_exp

Create an joint gene expression table of all samples
hg19DBNM

hg19-RefSeq
iGC

iGC: an integrated analysis package of gene expression and copy number alteration
direct_gene_cna

Load the existed CNA gain/loss based on gene location.
find_cna_driven_gene

Perform an integrated analysis of gene expression (GE) and copy number alteration (CNA)