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iNEXT.4steps (version 1.0.1)

Four-Step Biodiversity Analysis Based on 'iNEXT'

Description

Expands 'iNEXT' to include the estimation of sample completeness and evenness. The package provides simple functions to perform the following four-step biodiversity analysis: STEP 1: Assessment of sample completeness profiles. STEP 2a: Analysis of size-based rarefaction and extrapolation sampling curves to determine whether the asymptotic diversity can be accurately estimated. STEP 2b: Comparison of the observed and the estimated asymptotic diversity profiles. STEP 3: Analysis of non-asymptotic coverage-based rarefaction and extrapolation sampling curves. STEP 4: Assessment of evenness profiles. The analyses in STEPs 2a, 2b and STEP 3 are mainly based on the previous 'iNEXT' package. Refer to the 'iNEXT' package for details. This package is mainly focusing on the computation for STEPs 1 and 4. See Chao et al. (2020) for statistical background.

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Version

Install

install.packages('iNEXT.4steps')

Monthly Downloads

352

Version

1.0.1

License

GPL (>= 3)

Maintainer

Anne Chao

Last Published

June 18th, 2024

Functions in iNEXT.4steps (1.0.1)

ggCompleteness

ggplot for depicting sample completeness profiles
iNEXT4steps

Main function for complete 4-step analysis
ggEvenness

ggplot for depicting evenness profiles
Completeness

Main function for STEP 1: Assessment of sample completeness
Evenness

Main function for STEP 4: Assessment of evenness
Data_woody_plant

Incidence raw data
Data_spider

Spider abundance data
iNEXT.4steps-package

Four-step biodiversity analysis based on iNEXT