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iNEXT.beta3D (version 1.0.2)

Interpolation and Extrapolation with Beta Diversity for Three Dimensions of Biodiversity

Description

As a sequel to 'iNEXT', the 'iNEXT.beta3D' package provides functions to compute standardized taxonomic, phylogenetic, and functional diversity (3D) estimates with a common sample size (for alpha and gamma diversity) or sample coverage (for alpha, beta, gamma diversity as well as dissimilarity or turnover indices). Hill numbers and their generalizations are used to quantify 3D and to make multiplicative decomposition (gamma = alpha x beta). The package also features size- and coverage-based rarefaction and extrapolation sampling curves to facilitate rigorous comparison of beta diversity across datasets. See Chao et al. (2023) for more details.

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Version

Install

install.packages('iNEXT.beta3D')

Monthly Downloads

208

Version

1.0.2

License

GPL (>= 3)

Maintainer

Anne Chao

Last Published

April 17th, 2024

Functions in iNEXT.beta3D (1.0.2)

Brazil_distM

Species pairwise distance matrix for species in the dataset Brazil_rainforests
DataInfobeta3D

Data information for reference samples
iNEXTbeta3D

iNterpolation and EXTrapolation with beta diversity for TD, PD and FD
print.iNEXTbeta3D

Printing iNEXTbeta3D object
ggiNEXTbeta3D

ggplot2 extension for the iNEXTbeta3D object
Second_growth_forests

Second-growth forests data (datatype = "incidence_raw" for taxonomic diversity)
iNEXT.beta3D-package

Interpolation and extrapolation with beta diversity for three dimensions of biodiversity
Brazil_rainforests

Brazil rainforests data (datatype = "abundance" for TD, PD, and FD)
Brazil_tree

Phylogenetic tree for Brazil abundance data