iRefR (version 1.13)

summary_protein: Get Summary Information for a given Protein

Description

Get information on interactors and complexes, for a given protein.

Usage

summary_protein(id_type, id_value, MITAB_table)

Arguments

id_type

Protein Identifier type ("irogid" for iRefIndex's protein iROG ID; "icrogid" for the canonical version of the iRefIndex's protein iROG ID).

id_value

Value of the iROG or icROG to summarize.

MITAB_table

MITAB/iRefIndex R table.

Value

output

R list containing: Number of interactions per interaction type, interactors in binary interactions, interactors in complex interactions and interactors in polymer interactions.

Examples

     ## Not run: 
#      ## get tables
#      irefindex_80_mouse = get_irefindex("10090", "8.0", tempdir())
# 
#      ## execute function
#      output_1 = summary_protein("irogid", "4374882", irefindex_80_mouse)
#      output_2 = summary_protein("icrogid", "4374882", irefindex_80_mouse)
#      output_3 = summary_protein("icrogid", "2892004", irefindex_80_mouse)
#      output_4 = summary_protein("icrogid", "1365685", irefindex_80_mouse)
#      ## End(Not run)