read_hdr_file

This function reads an HDR file and extracts relevant lines containing parameters and their values.

A comprehensive suite of tools for managing, processing, and analyzing data from the IFCB. I R FlowCytobot ('iRfcb') supports quality control, geospatial analysis, and preparation of IFCB data for publication in databases like <https://www.gbif.org>, <https://www.obis.org>, <https://emodnet.ec.europa.eu/en>, <https://shark.smhi.se/>, and <https://www.ecotaxa.org>. The package integrates with the MATLAB 'ifcb-analysis' tool, which is described in Sosik and Olson (2007) <doi:10.4319/lom.2007.5.204>, and provides features for working with raw, manually classified, and machine learning–classified image datasets. Key functionalities include image extraction, particle size distribution analysis, taxonomic data handling, and biomass concentration calculations, essential for plankton research.

Anders Torstensson

iRfcb

Tools for Managing Imaging FlowCytobot (IFCB) Data

Kendra Hayashi

Jamie Enslein

Raphael Kudela

Alle Lie

Jayme Smith

DTO-BioFlow 

SBDI 

read_hdr_file function

<dl><dt>file</dt>
<dd>A character string specifying the path to the HDR file.</dd></dl>

Arguments

Function to Read Individual Files and Extract Relevant Lines — read_hdr_file

<dl>

<dt>file</dt>
<dd>A character string specifying the path to the HDR file.</dd>

</dl>

read_hdr_file: Function to Read Individual Files and Extract Relevant Lines

Description

Usage

Value

Arguments