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iSFun (version 1.1.0)

Integrative Dimension Reduction Analysis for Multi-Source Data

Description

The implement of integrative analysis methods based on a two-part penalization, which realizes dimension reduction analysis and mining the heterogeneity and association of multiple studies with compatible designs. The software package provides the integrative analysis methods including integrative sparse principal component analysis (Fang et al., 2018), integrative sparse partial least squares (Liang et al., 2021) and integrative sparse canonical correlation analysis, as well as corresponding individual analysis and meta-analysis versions. References: (1) Fang, K., Fan, X., Zhang, Q., and Ma, S. (2018). Integrative sparse principal component analysis. Journal of Multivariate Analysis, . (2) Liang, W., Ma, S., Zhang, Q., and Zhu, T. (2021). Integrative sparse partial least squares. Statistics in Medicine, .

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Version

Install

install.packages('iSFun')

Monthly Downloads

166

Version

1.1.0

License

GPL (>= 2)

Maintainer

Rui Ren

Last Published

January 3rd, 2022

Functions in iSFun (1.1.0)

ispls.plot

Plot the results of ispls
ispca.plot

Plot the results of ispca
iscca.cv

Cross-validation for iscca
iscca.plot

Plot the results of iscca
ispls

Integrative sparse partial least squares
ispca.cv

Cross-validation for ispca
ispca

Integrative sparse principal component analysis
ispls.cv

Cross-validation for ispls
iscca

Integrative sparse canonical correlation analysis
meta.scca

Meta-analytic sparse canonical correlation analysis method in integrative study
preview.pls

Statistical description before using function ispls
scca

Sparse canonical correlation analysis
preview.cca

Statistical description before using function iscca
simData.cca

Example data for method iscca
simData.pls

Example data for method ispls
preview.pca

Statistical description before using function ispca
meta.spca

Meta-analytic sparse principal component analysis method in integrative study
simData.pca

Example data for method ispca
spca

Sparse principal component analysis
spls

Sparse partial least squares
meta.spls

Meta-analytic sparse partial least squares method in integrative study