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icesTAF (version 2.3-0)

Functions to Support the ICES Transparent Assessment Framework

Description

Functions to support the ICES Transparent Assessment Framework to organize data, methods, and results used in ICES assessments. ICES is an organization facilitating international collaboration in marine science.

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Version

Install

install.packages('icesTAF')

Monthly Downloads

406

Version

2.3-0

License

GPL (>= 2)

Maintainer

Arni Magnusson

Last Published

April 8th, 2019

Functions in icesTAF (2.3-0)

line.endings

Line Endings
deps

List Dependencies
sourceDir

Source Directory
sourceTAF

Run TAF Script
process.bib

Process Metadata
xtab2taf

Convert Crosstab Table to TAF Format
write.taf

Write TAF Table to File
plus

Rename Plus Group Column
long2taf

Convert Long Table to TAF Format
taf.unzip

Unzip File
draft.software

Draft SOFTWARE.bib
make

Run R Script If Needed
latin1.to.utf8

Convert File Encoding
lim

Axis Limits
read.taf

Read TAF Table from File
taf.colors

TAF Colors
rmdir

Remove Empty Directory
taf.library

Enable TAF Library
msg

Show Message
makeAll

Run All TAF Scripts as Needed
taf2long

Convert TAF Table to Long Format
file.encoding

File Encoding
os

Operating System
rnd

Round Columns
flr2taf

Convert FLR Table to TAF Format
mkdir

Create Directory
icesTAF-package

Functions to Support the ICES Transparent Assessment Framework
makeTAF

Run TAF Script If Needed
sourceAll

Run All TAF Scripts
summary.taf

Summary Results in TAF Format
taf.png

PNG Device
taf.bootstrap

Bootstrap TAF Analysis
taf.skeleton

TAF Skeleton
zoom

Zoom
tt

TAF Transpose
taf2xtab

Convert TAF Table to Crosstab Format
download

Download File
catage.xtab

Catch at Age in Crosstab Format
div

Divide Columns
draft.data

Draft DATA.bib
catage.long

Catch at Age in Long Format
cp

Copy Files
dos2unix

Convert Line Endings
catage.taf

Catch at Age in TAF Format
clean

Clean TAF Directories