idendr0 v1.5.3

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by Tomas Sieger

Interactive Dendrograms

Interactive dendrogram that enables the user to select and color clusters, to zoom and pan the dendrogram, and to visualize the clustered data not only in a built-in heat map, but also in 'GGobi' interactive plots and user-supplied plots. This is a backport of Qt-based 'idendro' (<https://github.com/tsieger/idendro>) to base R graphics and Tcl/Tk GUI.

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idendr0

'idendr0' is an interactive dendrogram that enables the user to select and color clusters, to zoom and pan the dendrogram, and to visualize the clustered data not only in a built-in heat map, but also in 'GGobi' interactive plots and user-supplied plots.

idendr0 is a backport of 'idendro' (https://github.com/tsieger/idendro) to base R graphics and Tcl/Tk GUI.

To install:

  • the latest released version: install.packages("idendr0")
  • the latest development version: devtools::install_github("tsieger/idendr0")

A simple example:

hc <- hclust(dist(iris[, 1:4]))
idendro(hc, iris)

For demos, please run `demo(package="idendr0")'.

Find out more at https://github.com/tsieger/idendr0

Functions in idendr0

Name Description
computeMemberIndices computeMemberIndices
fig2heatmap fig2heatmap
computeLeafOrder computeLeafOrder
computeSubclusterIndices computeSubclusterIndices
clusterId2SegmentIds clusterId2SegmentIds
computeLeafColorIdxs computeLeafColorIdxs
createClustersFromLeafColors createClustersFromLeafColors
fig2dendro fig2dendro
dendro2fig dendro2fig
cutDendro cutDendro
idendr0-package Interactive Dendrograms
prepareDendro prepareDendro
hca5000
printVar printVar
idendro Interactive Dendrogram
popDendroZoomHistory popDendroZoomHistory
gw2xy gw2xy
popSelectionHistory popSelectionHistory
heatmap2fig heatmap2fig
mySeq mySeq
unselectAllClusters unselectAllClusters
pushSelectionHistory pushSelectionHistory
smoothHeatmap smoothHeatmap
unselectCurrentCluster unselectCurrentCluster
xy2gw xy2gw
selectCluster selectCluster
smoothHeatmapAccordingToClusters smoothHeatmapAccordingToClusters
pushDendroZoomHistory pushDendroZoomHistory
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Details

Type Package
Date 2017-02-22
URL http://github.com/tsieger/idendr0
BugReports https://github.com/tsieger/idendr0/issues
License GPL-2
LazyLoad yes
LazyData true
NeedsCompilation no
Packaged 2017-02-22 12:09:45 UTC; sieger
Repository CRAN
Date/Publication 2017-02-22 14:13:11

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