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idendr0

'idendr0' is an interactive dendrogram that enables the user to select and color clusters, to zoom and pan the dendrogram, and to visualize the clustered data not only in a built-in heat map, but also in 'GGobi' interactive plots and user-supplied plots.

idendr0 is a backport of 'idendro' (https://github.com/tsieger/idendro) to base R graphics and Tcl/Tk GUI.

To install:

  • the latest released version: install.packages("idendr0")
  • the latest development version: devtools::install_github("tsieger/idendr0")

A simple example:

hc <- hclust(dist(iris[, 1:4]))
idendro(hc, iris)

For demos, please run `demo(package="idendr0")'.

Find out more at https://github.com/tsieger/idendr0

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Version

Install

install.packages('idendr0')

Monthly Downloads

212

Version

1.5.3

License

GPL-2

Issues

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Stars

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Maintainer

Tomas Sieger

Last Published

February 22nd, 2017

Functions in idendr0 (1.5.3)

computeMemberIndices

computeMemberIndices
fig2heatmap

fig2heatmap
computeLeafOrder

computeLeafOrder
computeSubclusterIndices

computeSubclusterIndices
clusterId2SegmentIds

clusterId2SegmentIds
computeLeafColorIdxs

computeLeafColorIdxs
createClustersFromLeafColors

createClustersFromLeafColors
fig2dendro

fig2dendro
dendro2fig

dendro2fig
cutDendro

cutDendro
idendr0-package

Interactive Dendrograms
prepareDendro

prepareDendro
hca5000

printVar

printVar
idendro

Interactive Dendrogram
popDendroZoomHistory

popDendroZoomHistory
gw2xy

gw2xy
popSelectionHistory

popSelectionHistory
heatmap2fig

heatmap2fig
mySeq

mySeq
unselectAllClusters

unselectAllClusters
pushSelectionHistory

pushSelectionHistory
smoothHeatmap

smoothHeatmap
unselectCurrentCluster

unselectCurrentCluster
xy2gw

xy2gw
selectCluster

selectCluster
smoothHeatmapAccordingToClusters

smoothHeatmapAccordingToClusters
pushDendroZoomHistory

pushDendroZoomHistory