A dataset containing simulated methylation array data for \(C\) CpG sites associated to \(G\) genes, from \(R=2\) sample types, collected from \(N=4\) patients.
data(methylation_data)A data frame with 205 rows and 10 columns.
Gene: The gene name.
CpG: The CpG site associated to the gene.
Patient1_M1: Methylation values from benign tissue from patient 1 for the corresponding CpG site.
Patient2_M1: Methylation values from benign tissue from patient 2 for the corresponding CpG site.
Patient3_M1: Methylation values from benign tissue from patient 3 for the corresponding CpG site.
Patient4_M1: Methylation values from benign tissue from patient 4 for the corresponding CpG site.
Patient1_M2: Methylation values from tumour tissue from patient 1 for the corresponding CpG site.
Patient2_M2: Methylation values from tumour tissue from patient 2 for the corresponding CpG site.
Patient3_M2: Methylation values from tumour tissue from patient 3 for the corresponding CpG site.
Patient4_M2: Methylation values from tumour tissue from patient 4 for the corresponding CpG site.
The methylation array data is assumed to be from benign and tumour tissues. The methylation data comprised of beta-valued methylation levels. The data needs to be transformed before applying idiffomix.
gene_expression_data
gene_chromosome_data