checkNameOTUdfMarks

data.frame, of chr. size with columns: OTU (optional),
chrName, for chr. with cen.: shortArmSize, longArmSize, for holoc.: chrSize

dfChrSize

data.frame, of marks (sites): OTU (opt / mandat. if in
dfChrSize), chrName markName markSize, for chr. with cen.: chrRegion (p,q)
markDistCen, for holoc: markPos

dfMarks

This function reads two data.frames the one with chromosome sizes
<code>dfChrSize</code> and one df with data of marks (sites) both have to have the
column <code>chrName</code> and if several species, <code>OTU</code>. The functions
returns <code>TRUE</code> if names of OTUs in data.frame of marks are included in
data.frame of chr. size.

internal

check

data.frame

Plot idiograms of several karyotypes having a set of data.frames for chromosome data
and optionally mark data. Supports micrometers and Mb. Marks can have square or dot form,
its legend (label) can be drawn inline or to the right of karyotypes. It is possible to
calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x>,
karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986)
<doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al.
(1964).

checkNameOTUdfMarks: Function to check names of chromosomes among data.frames

Description

Usage

Arguments

Value