chrbasicdataHolo

dfChrSizeHolo

bigdfChrSizeHolo

parentalAndHybHoloChrSize

bigdfOfChrSize3Mb

dfChrSizeHolo: Example data for holocentrics for 1 species
bigdfChrSizeHolo: Example data for holocentrics for several species, OTU
parentalAndHybHoloChrSize: Example data for holocentrics for several species, OTU
bigdfOfChrSize3Mb: Example data in Mb without chr. arms for three species, OTU

datasets

Plot idiograms of several karyotypes having a set of data.frames for chromosome data
and optionally mark data. Supports micrometers and Mb. Marks can have square or dot form,
its legend (label) can be drawn inline or to the right of karyotypes. It is possible to
calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x>,
karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986)
<doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al.
(1964).

Fernando Roa

idiogramFISH

Idiograms with Marks and Karyotype Indices

Mariana PC Telles 

chrbasicdataHolo function

data.frame with columns:<dl class="dl-horizontal">
<dt>OTU</dt><dd>grouping OTU (species), optional if only one OTU</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>chrSize</dt><dd>size of chromosome, micrometers or Mb</dd>
<dt>group</dt><dd>chromosome group, optional</dd>
</dl>

Format

Chr. basic data Holo. — chrbasicdataHolo

data.frame with columns:<dl class='dl-horizontal'>
<dt>OTU</dt><dd>grouping OTU (species), optional if only one OTU</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>chrSize</dt><dd>size of chromosome, micrometers or Mb</dd>
<dt>group</dt><dd>chromosome group, optional</dd>
</dl>

chrbasicdataHolo: Chr. basic data Holo.

Description

Usage

Arguments

Format

See Also