genBankReadIF

<p>name of file to read, downloaded from genBank, or, object from <code>rentrez::entrez_fetch(db="nuccore", id="theID", rettype="gbwithparts", retmode = "text")</code></p>

filename.gb

<p>genBankReadIF: creates a list of data.frames from a genbank format file or a rentrez object</p>

Genbank

Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames
for chromosome data and optionally mark data.
Supports micrometers, cM and Mb.
Seven styles of marks are available: square, dots, cM, cMLeft, cenStyle, upArrow, downArrow;
its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in
concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964)
<doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999)
<doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes
by morphology Guerra (1986) and Levan et al. (1964).

genBankReadIF: FUNCTION genBankReadIF

Description

Usage

Arguments

Value