chrbasicdatamono

dfOfChrSize

bigdfOfChrSize

humChr

allChrSizeSample

parentalAndHybChrSize

traspadf

dfOfChrSize: Example data for monocentrics
bigdfOfChrSize: Example data for monocentrics for several species, OTU
humChr: Example data for human karyotype (Adler 1994)
allChrSizeSample: Example data for monocentrics for several species, OTU
parentalAndHybChrSize: Example data for monocentrics for GISH
traspadf: Example data for monocentrics

datasets

Plot idiograms of several karyotypes having a set of data.frames for chromosome data
and optionally mark data. Supports micrometers, cM and Mb. Marks can have square, dot, or cM style,
its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in
concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964)
<doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999)
<doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes
by morphology Guerra (1986) and Levan et al. (1964).

Fernando Roa

idiogramFISH

Idiograms with Marks and Karyotype Indices

Mariana PC Telles 

chrbasicdatamono function

data.frame with columns:<dl class="dl-horizontal">
<dt>OTU</dt><dd>OTU, species, optional if only one OTU (species)</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>shortArmSize</dt><dd>size of short arm, micrometers</dd>
<dt>longArmSize</dt><dd>size of long arm, micrometers</dd>
<dt>group</dt><dd>chr group, optional</dd>
</dl>

Format

Chr. basic data Monocen. — chrbasicdatamono

data.frame with columns:<dl class='dl-horizontal'>
<dt>OTU</dt><dd>OTU, species, optional if only one OTU (species)</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>shortArmSize</dt><dd>size of short arm, micrometers</dd>
<dt>longArmSize</dt><dd>size of long arm, micrometers</dd>
<dt>group</dt><dd>chr group, optional</dd>
</dl>

Chr. basic data Monocen.

chrbasicdatamono: Chr. basic data Monocen.

Description

Usage

Arguments

Format

References

See Also