markposDFs

bigdfOfMarks

dfOfMarks

dfOfMarks2

humMarkPos

allMarksSample

dfAlloParentMarks

traspaMarks

When several OTUs, some can be monocen. and others holocen. Marks distance for monocen. are measured from cen. and for
holocen. from top or bottom depending on <code>param</code> <code>origin</code>. See vignettes.
bigdfOfMarks: Example data for mark position with column OTU
dfOfMarks: Example data for marks' position
dfOfMarks2: Marks' position including cen. marks
humMarkPos: human karyotype marks' position
allMarksSample: Example data for marks' position
dfAlloParentMarks: Example data for mark position of GISH of monocen.
traspaMarks: T. spathacea marks' position

datasets

Plot idiograms of several karyotypes having a set of data.frames for chromosome data
and optionally mark data. Supports micrometers, cM and Mb. Marks can have square, dot, or cM style,
its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in
concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964)
<doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999)
<doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes
by morphology Guerra (1986) and Levan et al. (1964).

Fernando Roa

idiogramFISH

Idiograms with Marks and Karyotype Indices

Mariana PC Telles 

markposDFs function

bigdfOfMarks a data.frame with columns:<dl class="dl-horizontal">
<dt>OTU</dt><dd>OTU, species, mandatory if in dfChrSize</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>markName</dt><dd>name of mark</dd>
<dt>chrRegion</dt><dd>use p for short arm, q for long arm, and cen for centromeric</dd>
<dt>markDistCen</dt><dd>distance of mark to centromere (not for cen)</dd>
<dt>markSize</dt><dd>size of mark (not for cen)</dd>
</dl>

Format

Mark Positional data - monocentrics — markposDFs

bigdfOfMarks a data.frame with columns:<dl class='dl-horizontal'>
<dt>OTU</dt><dd>OTU, species, mandatory if in dfChrSize</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>markName</dt><dd>name of mark</dd>
<dt>chrRegion</dt><dd>use p for short arm, q for long arm, and cen for centromeric</dd>
<dt>markDistCen</dt><dd>distance of mark to centromere (not for cen)</dd>
<dt>markSize</dt><dd>size of mark (not for cen)</dd>
</dl>

Mark Positional data - monocentrics

markposDFs: Mark Positional data - monocentrics

Description

Usage

Arguments

Format

References

See Also