chrbasicdataHolo

dfChrSizeHolo

bigdfChrSizeHolo

parentalAndHybHoloChrSize

bigdfOfChrSize3Mb

dfChrSizeHolo: Example data for holocentrics for 1 species
bigdfChrSizeHolo: Example data for holocentrics for several species, OTU
parentalAndHybHoloChrSize: Example data for holocentrics for several species, OTU
bigdfOfChrSize3Mb: Example data in Mb without chr. arms for three species, OTU

datasets

Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames
for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with
visible chromatids (when not circular).
Supports micrometers, cM and Mb or any unit. Two styles of centromeres are available: triangular and rounded;
and seven styles of marks: square, dots, cM, cMLeft, cenStyle, upArrow, downArrow;
its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in
concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964)
<doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999)
<doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes
by morphology Guerra (1986) and Levan et al. (1964).

Fernando Roa

idiogramFISH

Idiograms with Marks and Karyotype Indices

Mariana PC Telles 

chrbasicdataHolo function

data.frame with columns:<dl class="dl-horizontal">
<dt>OTU</dt><dd>grouping OTU (species), optional if only one OTU</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>chrSize</dt><dd>size of chromosome, micrometers or Mb</dd>
<dt>group</dt><dd>chromosome group, optional</dd>
</dl>An object of class <code>data.frame</code> with 12 rows and 3 columns.
An object of class <code>data.frame</code> with 13 rows and 3 columns.
An object of class <code>data.frame</code> with 14 rows and 3 columns.

Format

Chr. basic data Holo. — chrbasicdataHolo

Chr. basic data Holo.

chrbasicdataHolo: Chr. basic data Holo.

Description

Usage

Arguments

Format

See Also