genBankReadIF

name of file to read, downloaded from genBank, or, object from <code>rentrez::entrez_fetch(db="nuccore", id="theID", rettype="gbwithparts", retmode = "text")</code>

filename.gb

genBankReadIF: creates a list of data.frames from a genbank format file or a rentrez object
Requires tidyr

Genbank

Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames
for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with
visible chromatids (when not circular).
Supports micrometers, cM and Mb or any unit. Two styles of centromeres are available: triangular and rounded;
and seven styles of marks: square, dots, cM, cMLeft, cenStyle, upArrow, downArrow;
its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in
concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964)
<doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999)
<doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes
by morphology Guerra (1986) and Levan et al. (1964).

genBankReadIF: FUNCTION genBankReadIF

Description

Usage

Arguments

Value