makedfMarkColorMycolors

markNames

character vector of names of colors

mycolors

character vector of colors to remove from mycolors

colorstoremove

character vector with default style <code>"square"</code> <code>"cM"</code> <code>"dots"</code>

defaultStyleMark

This function reads character vector with marks names, a character vector of prohibited colors and a custom list of colors
to be associated with the mark names
It returns a data.frame with color and style for each mark

internal

mark

Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames
for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with
visible chromatids (when not circular).
Supports micrometers, cM and Mb or any unit. Two styles of centromeres are available: triangular and rounded;
and seven styles of marks: square, dots, cM, cMLeft, cenStyle, upArrow, downArrow;
its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in
concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964)
<doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999)
<doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes
by morphology Guerra (1986) and Levan et al. (1964).

makedfMarkColorMycolors: Function to automatically make a data.frame of Marks' characterisitcs

Description

Usage

Arguments

Value