cenmarkdata

bigdfDataCen

dfOfCenMarks

allCenMarksSample

bigdfDataCen: Example data for centromeric marks df with column OTU
dfOfCenMarks: Example data for centromeric marks
allCenMarksSample: Example data for centromeric marks

datasets

Plot idiograms of several karyotypes having a set of dataframes for chromosome data
and optionally mark data. Includes also a function to plot holocentrics and its marks supporting
micrometers and Mb. Marks can have square or dot form, its legend (label) can be drawn inline
or to the right of karyotypes. It is possible to calculate
chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x> ,
karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and
Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

Fernando Roa

idiogramFISH

Idiograms with Marks and Karyotype Indices

Mariana PC Telles 

cenmarkdata function

bigdfDataCen a data.frame with cols:<dl class="dl-horizontal">
<dt>OTU</dt><dd>OTU, species, mandatory if in dfChrSize</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>markName</dt><dd>name of mark (site)</dd>
</dl>

Format

Centromeric Mark data — cenmarkdata

bigdfDataCen a data.frame with cols:<dl class='dl-horizontal'>
<dt>OTU</dt><dd>OTU, species, mandatory if in dfChrSize</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>markName</dt><dd>name of mark (site)</dd>
</dl>

cenmarkdata: Centromeric Mark data

Description

Usage

Arguments

Format

See Also