asymmetryA2

dfChrSize

This function reads a dataframe with columns:
<code>shortArmSize</code> and <code>longArmSize</code> and optionally <code>OTU</code> and
returns a list with the A2 values for the OTUs
If several species present, use column "OTU".
$$A_{2} = \frac{sCL}{xCL}$$
(s = std dev, CL = chr. length, x = mean)
related to:
$$CV_{CL} = A_{2} * 100$$
(CV = coeff. var.)

dataframe

size

Plot idiograms of several karyotypes having a set of dataframes for chromosome data
and optionally mark data. Includes also a function to plot holocentrics and its marks supporting
micrometers and Mb. Marks can have square or dot form, its legend (label) can be drawn inline
or to the right of karyotypes. It is possible to calculate
chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x> ,
karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and
Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

Fernando Roa

idiogramFISH

Idiograms with Marks and Karyotype Indices

Mariana PC Telles 

asymmetryA2 function

Function to calculate karyotype asymmetry — asymmetryA2

Function to calculate karyotype asymmetry

asymmetryA2: Function to calculate karyotype asymmetry

Description

Usage

Arguments

Value

References

Examples