checkNameOTUdfMarks

dataframe, of chr. size with columns: OTU (optional),
chrName, for chr. with cen.: shortArmSize, longArmSize, for holoc.: chrSize

dfChrSize

dataframe, of marks (sites): OTU (opt / mandat. if in
dfChrSize), chrName markName markSize, for chr. with cen.: markArm (p,q)
markDistCen, for holoc: markPos

dfMarks

This function reads two dataframes the one with chromosome sizes
<code>dfChrSize</code> and one df with data of marks (sites) both have to have the
column <code>chrName</code> and if several species, <code>OTU</code>. The functions
returns <code>TRUE</code> if names of OTUs in dataframe of marks are included in
dataframe of chr. size.

internal

dataframe

check

Plot idiograms of several karyotypes having a set of dataframes for chromosome data
and optionally mark data. Includes also a function to plot holocentrics and its marks supporting
micrometers and Mb. Marks can have square or dot form, its legend (label) can be drawn inline
or to the right of karyotypes. It is possible to calculate
chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x> ,
karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and
Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

checkNameOTUdfMarks: Function to check names of chromosomes among dataframes

Description

Usage

Arguments

Value