chrbasicdataHolo

dfChrSizeHolo

bigdfChrSizeHolo

dfChrSizeHolo: Example data for holocentrics for 1 species
bigdfChrSizeHolo: Example data for holocentrics for several species, OTU

datasets

Plot idiograms of several karyotypes having a set of dataframes for chromosome data
and optionally mark data. Includes also a function to plot holocentrics and its marks supporting
micrometers and Mb. Marks can have square or dot form, its legend (label) can be drawn inline
or to the right of karyotypes. It is possible to calculate
chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x> ,
karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and
Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

Fernando Roa

idiogramFISH

Idiograms with Marks and Karyotype Indices

Mariana PC Telles 

chrbasicdataHolo function

data.frame with cols:<dl class="dl-horizontal">
<dt>OTU</dt><dd>grouping OTU (species), optional if only one OTU</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>chrSize</dt><dd>size of chromosome, micrometers or Mb</dd>
<dt>group</dt><dd>chromosome group, optional</dd>
</dl>

Format

Chr. basic data Holo. — chrbasicdataHolo

data.frame with cols:<dl class='dl-horizontal'>
<dt>OTU</dt><dd>grouping OTU (species), optional if only one OTU</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>chrSize</dt><dd>size of chromosome, micrometers or Mb</dd>
<dt>group</dt><dd>chromosome group, optional</dd>
</dl>

chrbasicdataHolo: Chr. basic data Holo.

Description

Usage

Arguments

Format

See Also