chrbasicdatamono

dfOfChrSize

bigdfOfChrSize

humChr

allChrSizeSample

dfOfChrSize: Example data for monocentrics
bigdfOfChrSize: Example data for monocentrics for several species, OTU
humChr: Example data for human karyotype (Adler 1994)
allChrSizeSample: Example data for monocentrics for several species, OTU

datasets

Plot idiograms of several karyotypes having a set of dataframes for chromosome data
and optionally mark data. Includes also a function to plot holocentrics and its marks supporting
micrometers and Mb. Marks can have square or dot form, its legend (label) can be drawn inline
or to the right of karyotypes. It is possible to calculate
chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x> ,
karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and
Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

Fernando Roa

idiogramFISH

Idiograms with Marks and Karyotype Indices

Mariana PC Telles 

chrbasicdatamono function

data.frame with cols:<dl class="dl-horizontal">
<dt>OTU</dt><dd>OTU, species, optional if only one OTU (species)</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>shortArmSize</dt><dd>size of short arm, micrometers</dd>
<dt>longArmSize</dt><dd>size of long arm, micrometers</dd>
<dt>group</dt><dd>chr group, optional</dd>
</dl>

Format

Chr. basic data — chrbasicdatamono

data.frame with cols:<dl class='dl-horizontal'>
<dt>OTU</dt><dd>OTU, species, optional if only one OTU (species)</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>shortArmSize</dt><dd>size of short arm, micrometers</dd>
<dt>longArmSize</dt><dd>size of long arm, micrometers</dd>
<dt>group</dt><dd>chr group, optional</dd>
</dl>

chrbasicdatamono: Chr. basic data

Description

Usage

Arguments

Format

References

See Also