markpos

bigdfOfMarks

dfOfMarks

humMarkPos

allMarksSample

bigdfOfMarks: Example data for mark position with column OTU
dfOfMarks: Example data for mark position
humMarkPos: human karyotype mark position
allMarksSample: Example data for mark position

datasets

Plot idiograms of several karyotypes having a set of dataframes for chromosome data
and optionally mark data. Includes also a function to plot holocentrics and its marks supporting
micrometers and Mb. Marks can have square or dot form, its legend (label) can be drawn inline
or to the right of karyotypes. It is possible to calculate
chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x> ,
karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and
Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

Fernando Roa

idiogramFISH

Idiograms with Marks and Karyotype Indices

Mariana PC Telles 

markpos function

bigdfOfMarks a data.frame with cols:<dl class="dl-horizontal">
<dt>OTU</dt><dd>OTU, species, mandatory if in dfChrSize</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>markName</dt><dd>name of mark</dd>
<dt>markArm</dt><dd>use p for short and q for long</dd>
<dt>markDistCen</dt><dd>distance of mark to centromere</dd>
<dt>markSize</dt><dd>size of mark</dd>
</dl>

Format

Mark Positional data - monocentrics — markpos

bigdfOfMarks a data.frame with cols:<dl class='dl-horizontal'>
<dt>OTU</dt><dd>OTU, species, mandatory if in dfChrSize</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>markName</dt><dd>name of mark</dd>
<dt>markArm</dt><dd>use p for short and q for long</dd>
<dt>markDistCen</dt><dd>distance of mark to centromere</dd>
<dt>markSize</dt><dd>size of mark</dd>
</dl>

markpos: Mark Positional data - monocentrics

Description

Usage

Arguments

Format

References

See Also