markdataholo

bigdfMarkPosHolo

dfMarkPosHolo

When several OTUs, some can be monocen. and others holocen. Marks distance for monocen. are measured from cen. and for
holocen. from top or bottom depending on <code>param</code> <code>origin</code>. See vignettes.
bigdfMarkPosHolo: Example data for mark position of holocentrics with column OTU
dfMarkPosHolo: Example data for mark position of holocentrics

datasets

Plot idiograms of several karyotypes having a set of dataframes for chromosome data
and optionally mark data. Includes also a function to plot holocentrics and its marks supporting
micrometers and Mb. Marks can have square or dot form, its legend (label) can be drawn inline
or to the right of karyotypes. It is possible to calculate
chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x> ,
karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and
Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

Fernando Roa

idiogramFISH

Idiograms with Marks and Karyotype Indices

Mariana PC Telles 

markdataholo function

data.frame with cols:<dl class="dl-horizontal">
<dt>OTU</dt><dd>OTU, species, optional</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>markName</dt><dd>name of mark</dd>
<dt>markPos</dt><dd>position from bottom or top (see parameter <code>origin</code> in plotIdiograms)</dd>
<dt>markSize</dt><dd>size of mark in micrometers or Mb</dd>
</dl>

Format

Mark Positional data - Holocen. — markdataholo

data.frame with cols:<dl class='dl-horizontal'>
<dt>OTU</dt><dd>OTU, species, optional</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>markName</dt><dd>name of mark</dd>
<dt>markPos</dt><dd>position from bottom or top (see parameter <code>origin</code> in plotIdiograms)</dd>
<dt>markSize</dt><dd>size of mark in micrometers or Mb</dd>
</dl>

markdataholo: Mark Positional data - Holocen.

Description

Usage

Arguments

Format

See Also