markpos

bigdfOfMarks

dfOfMarks

dfOfMarks2

humMarkPos

allMarksSample

When several OTUs, some can be monocen. and others holocen. Marks distance for monocen. are measured from cen. and for
holocen. from top or bottom depending on <code>param</code> <code>origin</code>. See vignettes.
bigdfOfMarks: Example data for mark position with column OTU
dfOfMarks: Example data for marks' position
dfOfMarks2: Marks' position including cen. marks
humMarkPos: human karyotype marks' position
allMarksSample: Example data for marks' position

datasets

Plot idiograms of several karyotypes having a set of dataframes for chromosome data
and optionally mark data. Includes also a function to plot holocentrics and its marks supporting
micrometers and Mb. Marks can have square or dot form, its legend (label) can be drawn inline
or to the right of karyotypes. It is possible to calculate
chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x> ,
karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and
Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

Fernando Roa

idiogramFISH

Idiograms with Marks and Karyotype Indices

Mariana PC Telles 

markpos function

bigdfOfMarks a data.frame with cols:<dl class="dl-horizontal">
<dt>OTU</dt><dd>OTU, species, mandatory if in dfChrSize</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>markName</dt><dd>name of mark</dd>
<dt>markArm</dt><dd>use p for short arm, q for long arm, and cen for centromeric</dd>
<dt>markDistCen</dt><dd>distance of mark to centromere (not for cen)</dd>
<dt>markSize</dt><dd>size of mark (not for cen)</dd>
</dl>

Format

Mark Positional data - monocentrics — markpos

bigdfOfMarks a data.frame with cols:<dl class='dl-horizontal'>
<dt>OTU</dt><dd>OTU, species, mandatory if in dfChrSize</dd>
<dt>chrName</dt><dd>name of chromosome</dd>
<dt>markName</dt><dd>name of mark</dd>
<dt>markArm</dt><dd>use p for short arm, q for long arm, and cen for centromeric</dd>
<dt>markDistCen</dt><dd>distance of mark to centromere (not for cen)</dd>
<dt>markSize</dt><dd>size of mark (not for cen)</dd>
</dl>

markpos: Mark Positional data - monocentrics

Description

Usage

Arguments

Format

References

See Also