plotlabelsright

The y axis coordinates of chromosomes

markLabelSpacer

chrWidth

data.frame of mark characteristics

dfMarkColorInternal

allMarkMaxSize

transformation value of karyotype height

normalizeToOne

markLabelSize

relative proportion of x vs y axes

xfactor

factor to increase width of legend squares and dots

legendWidth

factor to increase height of legend squares and dots

legendHeight

character, regex to remove from markNames

pattern, 

numeric modify Y position of legend

legendYcoord

boolean, when <code>TRUE</code> plots only one dot

useOneDot

The x axis coordinates of chromosomes

It returns a graphic element with the legends

internal

Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with visible chromatids (when not circular). Supports micrometers, cM and Mb or any unit. Two styles of centromeres are available: triangular and rounded; and six styles of marks: square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow, downArrow; its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

plotlabelsright: This is an internal function to plot labels to the right, when "aside" for its position

Description

Usage

Arguments

Value