idiogramFISH (version 2.0.0)

roundPlotMark: roundPlotMark This is an internal function that plot marks

Description

It returns a plot

Usage

roundPlotMark(
  bannedMarkName,
  squareness,
  xMark,
  yMark,
  dfMarkColorInternal,
  listOfdfMarkPosSq,
  chrWidth,
  specialChrWidth,
  yfactor,
  n,
  lwd.chr,
  listOfdfChromSize,
  circularPlot,
  y,
  markLabelSize,
  pattern,
  separFactor,
  labelSpacing,
  circleCenter,
  circleCenterY,
  radius,
  legend,
  ylistTransChr,
  rotation,
  labelOutwards
)

Arguments

squareness

squareness of vertices <

xMark

x component of polygon

yMark

yMark component of polygon

dfMarkColorInternal

colors for marks

listOfdfMarkPosSq

list of df. of mark pos.

chrWidth

numeric, width of chr.

specialChrWidth

numeric, width of chr.

yfactor

yMark distortion based on canvas proportion

n

numeric, to define vertices of rounded portions

lwd.chr

thick of border line

listOfdfChromSize

chr size df list

circularPlot

boolean TRUE for circ.

y

list, y coords.

markLabelSize

numeric, font size

pattern

character, regex

separFactor

numeric, sep. kars.

labelSpacing

numeric, spacing

circleCenter

numeric

circleCenterY

numeric

radius

numeric

legend

character

ylistTransChr

list, transf. coords.

rotation

rotate

labelOutwards

srt

Value

plot