makedfMarkColor

This function reads character vector with marks names
It returns a data.frame with color and style for each mark

internal

mark

Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with visible chromatids. Supports micrometers, cM and Mb or any unit. Three styles of centromeres are available: triangle, rounded and inProtein; and six styles of marks are available: square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow (downArrow), exProtein (inProtein); its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

Fernando Roa

idiogramFISH

Shiny App. Idiograms with Marks and Karyotype Indices

Mariana PC Telles 

makedfMarkColor function

<dl><dt>dfMarkColor</dt>
<dd>d.f of marks to use</dd>
<dt>markNames</dt>
<dd>names of marks</dd>
<dt>colorstoremove</dt>
<dd>remove this colors from the result</dd>
<dt>defaultStyleMark</dt>
<dd>character vector with default style <code>"square"</code>
<code>"cM"</code>
<code>"dots"</code></dd></dl>

Arguments

Function to automatically make a data.frame of Marks' characterisitcs — makedfMarkColor

<dl>

<dt>dfMarkColor</dt>
<dd>d.f of marks to use</dd>


<dt>markNames</dt>
<dd>names of marks</dd>


<dt>colorstoremove</dt>
<dd>remove this colors from the result</dd>


<dt>defaultStyleMark</dt>
<dd>character vector with default style <code>"square"</code>
<code>"cM"</code>
<code>"dots"</code></dd>

</dl>

makedfMarkColor: Function to automatically make a data.frame of Marks' characterisitcs

Description

Usage

Value

Arguments