plotlabelsright

It returns a graphic element with the legends

internal

Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with visible chromatids. Supports micrometers, cM and Mb or any unit. Three styles of centromeres are available: triangle, rounded and inProtein; and six styles of marks are available: square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow (downArrow), exProtein (inProtein); its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

Fernando Roa

idiogramFISH

Shiny App. Idiograms with Marks and Karyotype Indices

Mariana PC Telles 

plotlabelsright function

<dl><dt>y</dt>
<dd>The y axis coordinates of chromosomes</dd>
<dt>markLabelSpacer</dt>
<dd>distance from right chr to legend</dd>
<dt>chrWidth</dt>
<dd>chr widht</dd>
<dt>dfMarkColorInt</dt>
<dd>data.frame of mark characteristics</dd>
<dt>allMarkMaxSize</dt>
<dd>maximum size of marks</dd>
<dt>normalizeToOne</dt>
<dd>transformation value of karyotype height</dd>
<dt>markLabelSize</dt>
<dd>font size of legends</dd>
<dt>xfactor</dt>
<dd>relative proportion of x vs y axes</dd>
<dt>legendWidth</dt>
<dd>factor to increase width of legend squares and dots</dd>
<dt>legendHeight</dt>
<dd>factor to increase height of legend squares and dots</dd>
<dt>n</dt>
<dd>numeric, vertices for round parts</dd>
<dt>pattern, </dt>
<dd>character, regex to remove from markNames</dd>
<dt>legendYcoord</dt>
<dd>numeric modify Y position of legend</dd>
<dt>useOneDot</dt>
<dd>boolean, when <code>TRUE</code> plots only one dot</dd></dl>

Arguments

This is an internal function to plot labels to the right, when "aside" for
its position — plotlabelsright

<dl>

<dt>y</dt>
<dd>The y axis coordinates of chromosomes</dd>


<dt>markLabelSpacer</dt>
<dd>distance from right chr to legend</dd>


<dt>chrWidth</dt>
<dd>chr widht</dd>


<dt>dfMarkColorInt</dt>
<dd>data.frame of mark characteristics</dd>


<dt>allMarkMaxSize</dt>
<dd>maximum size of marks</dd>


<dt>normalizeToOne</dt>
<dd>transformation value of karyotype height</dd>


<dt>markLabelSize</dt>
<dd>font size of legends</dd>


<dt>xfactor</dt>
<dd>relative proportion of x vs y axes</dd>


<dt>legendWidth</dt>
<dd>factor to increase width of legend squares and dots</dd>


<dt>legendHeight</dt>
<dd>factor to increase height of legend squares and dots</dd>


<dt>n</dt>
<dd>numeric, vertices for round parts</dd>


<dt>pattern, </dt>
<dd>character, regex to remove from markNames</dd>


<dt>legendYcoord</dt>
<dd>numeric modify Y position of legend</dd>


<dt>useOneDot</dt>
<dd>boolean, when <code>TRUE</code> plots only one dot</dd>

</dl>

plotlabelsright: This is an internal function to plot labels to the right, when "aside" for its position

Description

Usage

Value

Arguments