combine_strat_model_output

Reduces the dimensions of stratified model output. Default behaviour is to remove stratification for all
variables. However, variables to reduce the dimensions of can be selected, as can variables to preserve with there structure intact.

Explore a range of infectious disease models in a consistent
framework. The primary aim of 'idmodelr' is to provide a library of
infectious disease models for researchers, students, and other interested
individuals. These models can be used to understand the underlying dynamics
and as a reference point when developing models for research. 'idmodelr'
also provides a range of utilities. These include: plotting functionality;
a simulation wrapper; scenario analysis tooling; an interactive dashboard;
tools for handling mult-dimensional models; and both model and parameter
look up tables. Unlike other modelling packages such as 'pomp'
(<https://kingaa.github.io/pomp/>), 'libbi' (<http://libbi.org>)
and 'EpiModel' (<http://www.epimodel.org>), 'idmodelr' serves primarily as
an educational resource. It is most comparable to epirecipes
(<http://epirecip.es/epicookbook/chapters/simple>) but provides a more
consistent framework, an R based workflow, and additional utility tooling.
After users have explored model dynamics with 'idmodelr' they may then
implement their model using one of these packages in order to utilise the
model fitting tools they provide. For newer modellers, this package
reduces the barrier to entry by containing multiple infectious disease
models, providing a consistent framework for simulation and visualisation,
and signposting towards other, more research focussed, resources.

Sam Abbott 

idmodelr

Infectious Disease Model Library and Utilities

Akira Endo 

combine_strat_model_output function

<dl><dt>df</dt>
<dd>A data frame with variables stratified using numeric labels.</dd>
<dt>strat</dt>
<dd>An integer specifying the number of stratifications to reduce.</dd>
<dt>compartments</dt>
<dd>A character vector specifying the unique population compartments.</dd>
<dt>hold_out_var</dt>
<dd>A character vector specifying the variables to keep unchanged. Defaults to NULL</dd></dl>

Arguments

Reduces the Dimensionality of a Stratified Model — combine_strat_model_output

<dl>

<dt>df</dt>
<dd>A data frame with variables stratified using numeric labels.</dd>


<dt>strat</dt>
<dd>An integer specifying the number of stratifications to reduce.</dd>


<dt>compartments</dt>
<dd>A character vector specifying the unique population compartments.</dd>


<dt>hold_out_var</dt>
<dd>A character vector specifying the variables to keep unchanged. Defaults to NULL</dd>

</dl>

combine_strat_model_output: Reduces the Dimensionality of a Stratified Model

Description

Usage

Value

Arguments

See Also

Examples